Peptide grouping in ProteinPilot software 5.0 by Christie Hunter | Aug 5, 2021 | Data Visualization, Life Science Research, ProteinPilot, Proteomics, QTOF, SCIEX information, ZenoTOF 7600 systemA new feature in ProteinPilot software 5.0 is the ability to do peptide grouping. When analyzing proteomics data from LC-MS/MS, one must take into account the multiple pieces of evidence supporting a peptide as well as any ambiguity that might still exist in the...
How does ProteinPilot software obtain the annotations during a database search? by Alexandra Antonoplis | Aug 5, 2021 | Data Visualization, Life Science Research, ProteinPilot, Proteomics, QTOF, SCIEX information, ZenoTOF 7600 systemWith the newest ProteinPilot software 5.0, we can annotate the database search results with ontology information about each protein using the information available from the UniProt website. After the final list of proteins is assembled during the search, the software...
Quickly compare identification results from ProteinPilot software by Christie Hunter | Aug 5, 2021 | Data Visualization, Life Science Research, ProteinPilot, Proteomics, QTOF, SCIEX information, ZenoTOF 7600 systemWhen a ProteinPilot Software search is complete, a ProteinPilot report is generated that contains all the false discovery rate (FDR) analysis information. More information on using the large and small ProteinPilot reports can be found here When doing method...
Using ProteoWizard for converting files – for use in ProteinPilot software by Jenny Albanese | Aug 5, 2021 | Data processing, Life Science Research, ProteinPilot, Proteomics, QTOF, SCIEX information, ZenoTOF 7600 systemProteoWizard is a set of open-source tools and libraries for proteomics researchers and includes file conversion tools that allow vendor-specific file formats to be converted to standard formats (mgf, mzML, mzXML and mzData). Learn how to download and install...
CloudTalk – CloudConnect and Experiment Manager for metabolomics by Alexandra Antonoplis | Aug 5, 2021 | Getting Started, How-to videos, Life Science Research, Metabolomics, OneOmicsThis Cloud Talk (7:44 min) describes how to upload data files to the SCIEX Cloud and organize them in Experiment Manager for metabolomics SWATH acquisition data processing