Software

Join the software discussions for in-depth answers to your questions. Dive deep into understanding the innovative algorithms and features that are core to our innovative SCIEX software solutions.

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MRM method transfer from a SCIEX Triple Quad or QTRAP 6500+ system to the SCIEX 7500 system

MRM method transfer from a SCIEX Triple Quad or QTRAP 6500+ system to the SCIEX 7500 system

General recommendations when beginning method development Objective: The purpose of this document is to provide a quick reference for transferring MRM-based quantification methods from a SCIEX Triple Quad or QTRAP 6500+ system to a SCIEX 7500 system. While the best...

How does the scoring and FDR analysis work for SWATH acquisition data processing? For proteomics

How does the scoring and FDR analysis work for SWATH acquisition data processing? For proteomics

Similar extraction processes are used in both the SWATH acquisition microapp in PeakView software on the desktop and the Extractor app in OneOmics suite. After the fragment ions have been selected for each peptide, the extracted ion chromatograms are generated and the...

How does the scoring and FDR analysis work for SWATH acquisition data processing? For proteomics

How are peptides and transitions selected for use in quantification, when importing from a ProteinPilot software group file – using SWATH acquisition microapp or Extractor in OneOmics suite?

Similar selection processes are used in both the SWATH acquisition microapp in PeakView software on the desktop and the Extractor app in OneOmics suite. During the protein grouping process in ProteinPilot software, there is an extensive analysis that is done on the...

How does the scoring and FDR analysis work for SWATH acquisition data processing? For proteomics

What software do I need to process my SWATH acquisition data using the desktop or cloud solutions?

Desktop solution: If you are processing your SWATH acquisition data using the SCIEX pipeline, there are a 3 software packages that work together seamlessly for processing.  First, you would process your IDA data using ProteinPilot software to create an ion library. ...

How does the scoring and FDR analysis work for SWATH acquisition data processing? For proteomics

What is SWATH acquisition and what are the critical acquisition attributes?

In data-independent acquisition strategies like SWATH acquisition, an expanded mass isolation window is stepped across a mass range covering the mass-to-charge (m/z) distribution of peptides and a full scan MS/MS spectrum is collected at each step. Post-acquisition,...

CloudTalk – Analytics for proteomics

CloudTalk – Multi-omics – comparing proteomics data with genomics data with OneOmics suite

Now that you have watched the other cloud talks and learned how to use the various different applications for data processing and results review, we show you in this cloud talk how to put it all together and process a multi-omics data set! This CloudTalk (19:14mins)...