The information needed for targeted data extraction in our current SWATH acquisition workflow is relatively simple. You need the parent ion m/z; you need the m/z and relative intensities of the major fragment ions that are produced during MS/MS; and you need to know...
With the Metabolomics App in the OneOmics suite, it is possible to upload a custom ion library for peak extraction by the Extractor App during the processing of SWATH acquisition data. When creating an ion library for use in the Metabolomics app, be sure to create a...