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What is the best way to build spectral ion libraries for use in processing of proteomics SWATH acquisition data?

What is the best way to build spectral ion libraries for use in processing of proteomics SWATH acquisition data?

The information needed for targeted data extraction in our current SWATH acquisition workflow is relatively simple.  You need the parent ion m/z; you need the m/z and relative intensities of the major fragment ions that are produced during MS/MS; and you need to know...

Using custom ion libraries for metabolomics SWATH acquisition data processing in the OneOmics suite

Using custom ion libraries for metabolomics SWATH acquisition data processing in the OneOmics suite

With the Metabolomics App in the OneOmics suite, it is possible to upload a custom ion library for peak extraction by the Extractor App during the processing of SWATH acquisition data. When creating an ion library for use in the Metabolomics app, be sure to create a...