sMRM Concurrency Calculator by Christie Hunter | Aug 20, 2021 | Data acquisition, QTRAP / Triple Quad, SCIEX information, TechnologyThis excel sheet allows you to quickly estimate the MRM concurrency and approximate dwell time for your Scheduled MRM Algorithm acquisition method. Paste your MRM method with retention times into the input tab then calculate the Excel workbook. Plots will update to...
Using .csv files to quickly assign metadata for large-scale studies in OneOmics suite by Alexandra Antonoplis | Aug 11, 2021 | Data processing, Life Science Research, Metabolomics, OneOmics, SCIEX informationIn the Experiments App within the OneOmics suite, metadata can be quickly assigned for large-scale studies using .csv files. To use .csv files for metadata assignment, first create a metabolomics or proteomics SWATH acquisition experiment and select .wiff files for...
How does FDR scoring work in the OneOmics suite for metabolomics? by Alexandra Antonoplis | Aug 11, 2021 | Data processing, Life Science Research, Metabolomics, OneOmics, SCIEX informationTo assess the statistical accuracy of library identifications, the Extractor App located within the Metabolomics App in the OneOmics suite features built-in false discovery rate (FDR) scoring for processing metabolomics data. The FDR scoring follows a target-decoy...
Using custom ion libraries for metabolomics SWATH acquisition data processing in the OneOmics suite by Alexandra Antonoplis | Aug 11, 2021 | Data processing, Libraries, Life Science Research, Metabolomics, OneOmics, SCIEX informationWith the Metabolomics App in the OneOmics suite, it is possible to upload a custom ion library for peak extraction by the Extractor App during the processing of SWATH acquisition data. When creating an ion library for use in the Metabolomics app, be sure to create a...
Uploading and using transcriptomics data in the OneOmics suite by Alexandra Antonoplis | Aug 11, 2021 | Data Visualization, Life Science Research, Multi-Omics, OneOmics, SCIEX informationRNA experiments can be created in the OneOmics suite for multi-omics analyses, enabling integration of transcriptomics data and proteomics data for biological insight. To build RNA experiments, either CloudConnect for PeakView software 2.2 or BaseSpace (Illumina) can...