Using custom ion libraries for metabolomics SWATH acquisition data processing in the OneOmics suite by Alexandra Antonoplis | Aug 11, 2021 | Data processing, Libraries, Life Science Research, Metabolomics, OneOmics, SCIEX informationWith the Metabolomics App in the OneOmics suite, it is possible to upload a custom ion library for peak extraction by the Extractor App during the processing of SWATH acquisition data. When creating an ion library for use in the Metabolomics app, be sure to create a...
Uploading and using transcriptomics data in the OneOmics suite by Alexandra Antonoplis | Aug 11, 2021 | Data Visualization, Life Science Research, Multi-Omics, OneOmics, SCIEX informationRNA experiments can be created in the OneOmics suite for multi-omics analyses, enabling integration of transcriptomics data and proteomics data for biological insight. To build RNA experiments, either CloudConnect for PeakView software 2.2 or BaseSpace (Illumina) can...
Clustering algorithms in MarkerView App by Christie Hunter | Aug 11, 2021 | Data Visualization, Life Science Research, Multi-Omics, OneOmics, Proteomics, SCIEX informationFinding interesting and significant changes across a biological dataset can be challenging, so having good algorithms that can mine large datasets for differences, and find the statistically significant changes is really important. Within the MarkerView App we have...
Merging two FASTA files by Alexandra Antonoplis | Aug 11, 2021 | Data processing, Life Science Research, OneOmics, ProteinPilot, Proteomics, SCIEX informationThere is an easy way to merge two FASTA files together. Open notepad and type this string: type %*>”newfile.fasta” Enter any name for the FASTA file between the quotes. Save the file as: Merge FASTA files.bat Copy the two files you want to merge into...
High complexity of the lipidome by Mackenzie Pearson | Aug 10, 2021 | Data acquisition, Food / Beverage, How-to videos, Life Science Research, Lipidomics, ZenoTOF 7600 systemThe complexity of the lipidome is diverse in the structure and there are many combinatorial isoforms that are available within nature. Currently, many different techniques are required to fully characterize a lipid molecule. What if you could do it in a single...