GEN-MKT-18-7897-A
Aug 27, 2025 | Blogs, Life Science Research | 0 comments
Introduction
With the launch of the ZenoTOF 8600 system, EAD has taken a significant leap forward in becoming a routine tool for metabolomics and lipidomics workflows. Building on the foundation laid by the ZenoTOF 7600 system, the 8600 system introduces enhanced sensitivity, function speed improvements, and multimodal capabilities that make EAD more practical and scalable for daily use. This blog explores how these advancements are transforming EAD from a specialized technique into a robust and accessible solution for high-throughput structural analysis, enabling researchers to unlock deeper insights with greater efficiency.
The evolution of EAD
The introduction of the ZenoTOF 7600 system marked a significant milestone in mass spectrometry. This system integrates EAD, providing a new paradigm for fragmentation technology. Unlike traditional methods like collision-induced dissociation (CID), which primarily breaks weaker bonds, EAD can cleave stronger bonds, offering more detailed structural information. This capability is particularly valuable for analyzing complex biological molecules such as lipids and metabolites.
Dr. Michael Witting, Deputy Head of the Metabolomics and Proteomics Core at Helmholtz Munich, highlighted the importance of EAD in a recent webinar. He stated, “Luckily, EAD has been brought up to the field. Now with EAD, we start to move closer to lipid biology, which enables us to have detailed lipid structure identification”.
How researchers apply EAD in daily workflows
Many researchers have rapidly adopted EAD in their daily workflows, leveraging its advanced capabilities to enhance their analyses. The ZenoTOF 7600 and 8600 systems’ tunable electron beam allows for precise fragmentation, making them suitable for a wide range of applications. Dr. Witting mentioned, “Lipids have a high structural diversity even within a single lipid class… EAD started to help us. So, we have been using the ZenoTOF since 2021, with the EAD technology, with EAD fragmentation”.
In his blog, Prof. Nicola Zamboni discussed how EAD on the ZenoTOF 7600 system can fragment virtually all C-C bonds in the fatty acid chain of singly charged lipids, providing detailed structural information that CID cannot. He explains, “One of the grand challenges in metabolomics using mass spectrometry (MS) is the limited and somewhat redundant information provided by collision-induced dissociation (CID). CID is incredibly versatile and quick, but tends to fragment weaker bonds, such as C-O bonds. This bias allows us to observe fragments indicative of specific functional groups easily… Unfortunately, CID struggles to break stronger bonds like C-C or C=C, which are crucial for resolving the structure in parts of the molecule dominated by hydrocarbons”.
Enhancing routine EAD workflows with the ZenoTOF 8600 system The ZenoTOF 8600 system represents a transformative step in making electron-activated dissociation (EAD) a practical tool for routine metabolomics and lipidomics workflows. With up to 10x greater MS/MS sensitivity and the ability to perform EAD at LC-compatible speeds (10–15 ms accumulation times), the system removes previous limitations around throughput and structural resolution. As Prof Zamboni explains, “With the 8600 system, we can now do EAD at 10–15 milliseconds. That’s LC-compatible. That’s routine.”
This leap in performance enables researchers to confidently apply EAD in high-throughput workflows, including 2-minute LC gradients, without sacrificing data quality. “We’re seeing fragmentation across the full lipid spectrum, even in ultra-fast gradients. That’s a game-changer,” Prof Zamboni adds.
The system’s ability to resolve previously indistinguishable isomers further elevates its utility in lipidomics: “We’re not just identifying more lipids; we’re resolving isomers that were previously indistinguishable.” These innovations make EAD not only more accessible and scalable but also robust and versatile, ideal for integration into routine omics pipelines. As Zamboni concludes, “EAD used to be a niche capability. With the 8600 system, it’s now a routine tool, fast, sensitive, and scalable.”
Supporting the integration of EAD into routine workflows
Several developments support the integration of EAD into routine workflows:
Looking ahead: Future trends and applications of EAD
Prof Nicola Zamboni has shown “The combination of Zeno trap and EAD gives us the confidence to go untargeted—and still get meaningful structural data.” The future of EAD in metabolomics and lipidomics looks promising, with several emerging trends and applications:
Conclusion: EAD as a cornerstone of routine omics research
Electron-activated dissociation (EAD) has evolved from a novel fragmentation technique into a powerful tool for routine metabolomics and lipidomics workflows. With the launch of the ZenoTOF 8600 system, EAD is now more accessible, scalable, and robust than ever before. The system’s enhanced sensitivity, speed, and multimodal capabilities, especially its ability to perform EAD at LC-compatible timescales and support high-throughput DIA workflows, remove previous barriers to adoption. Researchers can now confidently integrate EAD into daily analyses, unlocking deeper structural insights across a broader range of compounds. As the technology continues to mature, EAD is poised to become a cornerstone of routine omics workflows, driving innovation in clinical, environmental, and personalized research.
As Prof Zamboni concluded, “It’s not just about more data, it’s about better data. Cleaner spectra, higher confidence, and more meaningful biology.”
Additional resources for exploring EAD and the ZenoTOF 8600 system
Watch Dr. Nicola Zamboni’s talk from the ASMS launch to gain deeper insights into the advancements and applications of EAD in metabolomics and lipidomics. Watch now.
Access Dr. Nicola Zamboni’s data from the ZenoTOF 8600 system to experience firsthand the potential of EAD in lipidomics. Access now. https://polybox.ethz.ch/index.php/s/cS36y4bfawPAdTH
Read Dr. Nicola Zamboni’s blog to gain deeper insights into the advancements and applications of EAD in metabolomics and lipidomics. Read now. On the benefits and role of electron-induced dissociation in lipidomics
Watch Dr. Michael Witting’s webinar to gain deeper insights into the advancements and applications of EAD in metabolomics and lipidomics. Watch now.
References
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