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This Cloud Talk (8:56 min) describes the basics of the Assembler app in the OneOmics suite for processing metabolomics SWATH acquisition data. RUO-MKT-18-12856-A
Author Highlights
Alexandra Antonoplis
CloudTalk – Analytics for metabolomics
This Cloud Talk (8:04 min) demonstrates the use of the Analytics application to explore metabolomics SWATH acquisition results. RUO-MKT-18-12857-A
CloudTalk – Extractor for metabolomics
This Cloud Talk (6:44 min) demonstrates the use of the Extractor app for processing of metabolomics data. RUO-MKT-18-12855-A
Using .csv files to quickly assign metadata for large-scale studies in OneOmics suite
In the Experiments App within the OneOmics suite, metadata can be quickly assigned for large-scale studies using .csv files. To use .csv files for metadata assignment, first create a metabolomics or proteomics SWATH acquisition experiment and select .wiff files for...
How does FDR scoring work in the OneOmics suite for metabolomics?
To assess the statistical accuracy of library identifications, the Extractor App located within the Metabolomics App in the OneOmics suite features built-in false discovery rate (FDR) scoring for processing metabolomics data. The FDR scoring follows a target-decoy...
Using custom ion libraries for metabolomics SWATH acquisition data processing in the OneOmics suite
With the Metabolomics App in the OneOmics suite, it is possible to upload a custom ion library for peak extraction by the Extractor App during the processing of SWATH acquisition data. When creating an ion library for use in the Metabolomics app, be sure to create a...
Uploading and using transcriptomics data in the OneOmics suite
RNA experiments can be created in the OneOmics suite for multi-omics analyses, enabling integration of transcriptomics data and proteomics data for biological insight. To build RNA experiments, either CloudConnect for PeakView software 2.2 or BaseSpace (Illumina) can...
Merging two FASTA files
There is an easy way to merge two FASTA files together. Open notepad and type this string: type %*>"newfile.fasta" Enter any name for the FASTA file between the quotes. Save the file as: Merge FASTA files.bat Copy the two files you want to merge into the same...
Automatic calibration in minutes for microflow LC with the OptiFlow source on ZenoTOF 7600 system
The OptiFlow ion source for the SCIEX ZenoTOF 7600 system is equipped with an ESI calibration probe for automatic calibration during microflow experiments (diagram below). The ESI probe is installed orthogonal to the microflow probe in the OptiFlow source and...
How do I use the new ProteinPilot software reports (small vs large)?
At the end of a database search, the software will write information into the ProteinPilot Report automatically. The ProteinPilotReport.xlsx file must be placed in the following directory for the automatic creation to work. C:\Program Files\AB...
Downloading and viewing ProteinPilot app group files on your desktop and extracting key exports
After the database search in OneOmics suite, the ProteinPilot software group file can be downloaded for viewing in your desktop ProteinPilot software 5.0.3. Please note that this is a beta version of ProteinPilot software, and as such is unsupported and provided...
Learn about the underlying results files created during processing, for use in other types of analysis
Intermediate files are generated and stored in your project folder at multiple processing steps. These files can be downloaded and opened for use in other tools or for applying to other types of analyses. View the community post on how to download files from either...
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