Unveiling the power of ZT Scan DIA: Insights from Ludwig Sinn’s presentation at World HUPO Congress 2024 by Rebekah Sayers | Feb 7, 2025 | Blogs, Life Science Research, Proteomics, ZenoTOF 7600 systemIn a recent presentation at the World HUPO Congress 2024, Ludwig Sinn from the Ralser lab shared exciting advancements in proteomics research, focusing on the innovative ZT Scan DIA acquisition modes developed in collaboration with SCIEX. Let us explore the key highlights and benefits of this innovative technology.
Exploring the power of ZT Scan DIA by Rebekah Sayers | Feb 7, 2025 | Blogs, Life Science Research, Proteomics, ZenoTOF 7600+ systemIn a recent presentation, Tim Heymann from Mann Lab at the Max Planck Institute of Biochemistry shared his first impressions of ZT Scan DIA, the novel data-independent acquisition strategy from SCIEX, highlighting its innovative approach and significant benefits for proteomics research. Let’s dive into the key points from his insightful talk.
Mass spec data across the cultivated meat value chain by Alex Ward | Jun 7, 2024 | Blogs, Food / Beverage, Life Science Research, Lipidomics, ProteomicsWe recently had the opportunity to chat with Alex Ward, PhD, Principal Consultant, Arta Bioanalytics to discover more about his work in developing transcriptomics and metabolomics data interpretation for the cultivated meat sector. As a specialist in multi-omics approaches, Alex is driving R&D, production and regulatory processes for the industry. Below are Alex’s responses to a few questions we asked, sharing his knowledge with the SCIEX community to drive the future of cultivated meat.
Loss the contact closure signal by amornmart jaratrungtawee | May 17, 2023 | Proteomics, QTOF, Questions, SCIEX OS softwareour 7600 couple with nanoLC Ultimate 3000 via contact closure. it has run without any loss connection during the batch. Just yesterday, the last injection keep equilibrating system until the LC finished the gradient run. We closed the software and power off LC and MS then started again but it did not help. The Dionex engineer also checked their LC and triggerring cable found both are ok.
Optimized rolling collision energy curves for IDA and SWATH DIA for peptides by Christie Hunter | Apr 18, 2023 | Data acquisition, Life Science Research, Proteomics, QTOF, SCIEX information, ZenoTOF 7600 systemDuring data dependent acquisition (DDA or IDA) or SWATH acquisition, the collision energy can be automatically adjusted according to the mass/charge and charge of the peptide. This dependency has been well characterized on our QTOF systems. By selecting rolling...
Protein Pilot Cysteine Modification by Matt Schnell | Mar 24, 2023 | ProteinPilot, Proteomics, QTOF, QuestionsHello,
New features in OneOmics suite by April Quinn-Paquet | Sep 22, 2022 | Bioanalysis/PK, Biopharma, Genomics, Life Science Research, Lipidomics, Metabolomics, Multi-Omics, OneOmics, Pharma, Proteomics, SCIEX information, SoftwareI just wanted to thank the readers here, both the OneOmics suite users who’ve shared their time and watched OneOmics grow, and for all the talented developers and scientists who’ve made OneOmics suite what it is today.
ProteinPilot phosphopeptide library and DIA-NN by Roz Jenkins | May 25, 2022 | Data processing, Life Science Research, ProteinPilot, Proteomics, QTOF, QuestionsI have prepared a spectral library for a phosphopeptide enriched sample and I am generating my SWATH samples from similarly enriched samples. The problem is that when I use DIA-NN for the retention time alignment and quant, it doesn’t recognise the terminology of the spectral library annotated by ProteinPilot. DIA-NN recognises Unimod:21 for phosphorylation, but PP uses phospho(Tyr) etc. Other than changing the data dictionary to get around the mismatch, anyone have any suggestions for how I might resolve this? Thank you, Roz
Current proteomics software compatibility for ZenoTOF 7600 system by Christie Hunter | May 20, 2022 | Data processing, Life Science Research, Proteomics, SCIEX information, ZenoTOF 7600 systemBelow is a summary of various other software packages that are useful for processing proteomics data from the ZenoTOF 7600 system. Note this list is not comprehensive and only covers the tools we have lightly tested to date. Acquisition Type Software Files needed...
Sequential processing of multiple data-files in ProteinPilot by Adrian Brown | May 12, 2022 | Data processing, ProteinPilot, Proteomics, QTOF, QuestionsI would like to use ProteinPilot 5.0.2 to process data-sets containing 16 wiff files acquired from fractionated peptides on a 6600 TripleTOF. A Precision T7910 workstation struggles to process four files in parallel and I would like to be able to queue sequential processing of individual files overnight. I currently use the ‘LC ‘ tab to load and process individual data-files but this leads to parallel processing. Is it possible to generate 16 .group files sequentially?