Drugs of Abuse Analysis: How LC-MS/MS Reduced Run Times by 66% and Tripled Throughput by SCIEX Community | 0 CommentsElevate Performance in Your Forensic Toxicology LabYou only need to skim through the United Nations World Drug Report 2018 to see that drug abuse is escalating. Associated with numerous medical, social, and legal problems, it comes as no surprise that ‘drugs of abuse’...
Same Pesticides, Same Risks, Different Standards by SCIEX Community | 0 CommentsShould we be worried about our health because our produce contains pesticides? The answer very much depends on where in the world you live–or where your food comes from. When it comes to protecting people from harmful pesticide residues in food, standards around the...
3 Advantages of Clinical Mass Spectrometry by SCIEX Community | 0 CommentsAre you thinking about replacing existing immunoassay technology with clinical mass spectrometry? Keep reading to discover how the 3 “S”s will help you make the decision. 1. How does sensitivity play a role? Many of the analytes measured in a clinical chemistry lab...
“There’s Nothing Wrong with a Little Bit of Mold.” WRONG! by SCIEX Community | 0 CommentsHas anyone ever said to you, “There’s nothing wrong with a bit of mold”? No one likes to waste food, and it’s not unusual for people to scrape or pick mold off of foods before eating! Believe it or not, there’s guidance on foods that are (and are not) safe to eat if...
An overview: LC-MS analysis of targeted protein degraders and their metabolites by Kirsten Craven | Blogs, Pharma, ZenoTOF 7600 systemTargeted protein degraders (TPD) are a relatively new therapeutic modality that opens the potential to target disease-causing proteins. These disease-causing proteins have been highly challenging for traditional small-molecule therapeutics to treat, making TPDs an exciting new therapeutic modality.
Guide decisions during cell line development with more information at the intact level by Roxana McCloskey | Biopharma, Blogs, Intabio ZT system, ZenoTOF 7600 systemMonitoring product quality attributes (PQAs) throughout monoclonal antibody (mAb) development is vital to ensuring drug safety and efficacy. By adopting orthogonal analytical techniques and integrating new technologies that have the potential to provide more information, it is possible to improve product quality and manufacturing efficiency and make more informed decisions.
Processing ZenoTOF 7600 system data with DIA-NN software by Christie Hunter | Data processing, Life Science Research, Proteomics, SCIEX information, ZenoTOF 7600 systemDIA-NN software is a powerful software tool for processing data independent acquisition (DIA) proteomics datasets. It uses neural networks and other algorithms to identify and quantify peptides and proteins from DIA data and is specifically optimized for fast...
Meat vs plant based. What is the best option? by SCIEX Community | Blogs, Food / Beverage, Food and BeverageAs we become more conscious about the planet, healthier lifestyles and our duty to protect the environment, attitudes and behaviours are shifting when it comes to food consumption.
How is the protein level fold-change computed on proteomics data using Assembler app? by Christie Hunter | Algorithms, Life Science Research, OneOmics, Proteomics, QTOF, SCIEX information, ZenoTOF 7600 systemWith bottom-up proteomics, we quantify peptides in the sample and then infer the protein level quantitation from that data. However, due to post-translational modifications, different protein isoforms, etc. we don’t always expect that all peptides associated with the...
Computing protein confidence with improved accuracy by reassessing peptide confidence during protein grouping by Christie Hunter | Data processing, Life Science Research, ProteinPilot, Proteomics, QTOF, SCIEX information, ZenoTOF 7600 systemProteinPilot software 4.0 and higher releases include a new method for calculating protein confidences that improves reliability at the end of protein lists. Figure 1 shows a simulated example that demonstrates how more accurate protein confidence is computed. Figure...
Intabio acquisition expands SCIEX portfolio of impactful solutions to accelerate biotherapeutic development by Community Manager | Biopharma, BlogsDue to the nature of their production, biotherapeutics are difficult to manufacture. Growth conditions, purification protocols and formulation requirements can introduce unintended modifications into the protein structure that may affect its efficacy and safety.
Breaking down the SCIEX Triple Quad™ 7500 LC-MS/MS System – QTRAP® Ready by Jianru Stahl-Zeng | Blogs, ClinicalSensitivity and robustness carry different meanings in the world of mass spectrometry. Generally, sensitivity refers to an instrument’s ability to achieve lower limits of detection (LOD). Robustness, on the other hand, refers to an instrument’s ability to consistently...
The honey sting by Katherine Hyland | Blogs, Food / BeverageAs a consumer it’s hard for me not to feel inundated with claims that our food is “all-natural” or “chemical-free” or that we should buy certain “superfoods” for their health benefits. We read labels and trust that the product we are buying is what we are truly...
Innovation that’s blasting through limitations in explosive detection by Pierre Negri | Blogs, ForensicMass spectrometry’s important role in identifying explosives The need for rapid explosive detection is now an unfortunate reality. The remit is multifaceted. The first is for preventative purposes, to protect us from any threat to life. The second is in the...
Testing for a Variety of Bath Salts is a Necessity for Forensic Labs by SCIEX Community | Blogs, Food / Beverage, ForensicTo date, when it comes to testing urine or oral fluids in the workplace not all psychoactive substances can be detected due to evolving substitutions. As legislation changes, so too do chemical formulations. Therefore researchers, like the authors of the following publication, A Validated Method for the Detection of 32 Bath Salts in Oral Fluids, published by Oxford Academic, analyze compounds using the best available methods so they can cast a wider net.
Empowering Your Lab with a Proactive Approach by SCIEX Community | Blogs, Software, TechnologyDo you stay in the lab day and night, waiting for a sample run to finish? Or do you set your instrument to run and trust that it will operate as intended while you are away? Is there a way you can have a support network behind you to help to ensure the smooth operation of your instruments?
Vitamin D Analysis Made Simple by SCIEX Community | Blogs, ClinicalLast month, Dr. Phil Levy, a clinician, professor, and researcher at Wayne State University, was invited to SCIEX to lecture on ‘Vitamin D Measurement and Implications for Patient Care.’ His message was simple and very clear: Vitamin D testing is here to stay!
What does World Food Day Mean to Food Scientists? by SCIEX Community | Blogs, Food / BeverageDid you know that the Food and Agricultural Organization of the United Nations (FAO), celebrates its founding each year on October 16 with World Food Day? You can explore their theme and commitment to ending hunger by 2030 here. As part of their, “Ten Facts You Need to Know about Hunger,” perhaps you may find it interesting that, “The world will need to grow 60 percent more food by 2050 to feed the growing population.”
Transform the Analytical Power of Your SCIEX Mass Spec with SelexION Technology by SCIEX Community | Blogs, TechnologyIf you are working with complex assays that demand exceptionally selective quantitative and qualitative performance, sometimes even the most powerful LC-MS/MS technology can’t always cut it alone.
Fipronil Contamination in Eggs Update by SCIEX Community | Blogs, Food / BeverageSince my last blog, there has been an ongoing investigation into the widespread impact of contaminated egg products. According to The Grocer, 26 more egg foods were pulled from shelves in the fipronil scandal, bringing the total number to 69 products....
5 Ways That SelexION Technology Will Address Your Biggest Analytical Challenges by SCIEX Community | Blogs, TechnologyIf you are a scientist working with complex assays, finding a way to significantly improve selectivity of detection could solve some of your biggest analytical headaches. Are we right? If so, then you are in the right place. If you are confronted with assay...
Multi-Laboratory Study Highlights the Quantitative Reproducibility of SWATH Acquisition (Nature Communications Paper) by Christie Hunter | Blogs, Life Science Research, ProteomicsReproducibility is one of the key tenets of the scientific method. But in a recent survey published in Nature, more than 70% of researchers were not able to reproduce another scientist’s experiments, and more than half could not reproduce their own experiments1. While the reasons for this are many, at least some of them stem from issues inherent in data collection.
Why is Metabolomics Important and How is it Enabling Precision Medicine? by Baljit Ubhi | Blogs, Life Science Research, MetabolomicsWhy is metabolomics important? Metabolomics is the large-scale study of metabolites in biofluids, tissue extracts, or organisms. Metabolites are small (<1000 Da), biologically active molecules such as glucose, cholesterol, creatinine, hormones, lipids, and more.
Training Program for Today’s Food and Beverage Testing Lab by SCIEX Community | Blogs, Food / BeverageIs your lab looking to acquire methods for food testing? What about getting better acquainted on the SCIEX Triple Quad™ or QTRAP® mass spectrometers to learn quantitation better? The following SCIEXUniversity Success Program training courses not only cover food and beverage quantitation but offer application training on topics such as meat speciation testing and pesticide analysis. Especially important considering the latest Fipronil contamination in eggs.I want to sign up for courses >
Phthalates Are Out, Accurate Detection Using LC-MS/MS Technology Is In by SCIEX Community | Blogs, Food / BeverageWhether you like it or not, the plastics industry is a growing market. According to an Allied Market Research report, it was valued at $15,179 million in 2015 and is projected to reach $18,538 million by 2022, growing at a CAGR of 2.9% from 2016 to 20221. Additionally, according to the report, in 2015, phthalates type held two-thirds of the global market in 2015. An important statistic since the use of various phthalates is restricted in many countries because of health concerns2.
SCIEX Lands HUPO Science and Technology Award by Tom Knapman | Blogs, Life Science Research, ProteomicsWe are pleased to congratulate its research scientists Stephen Tate and Ron Bonner (retired) for being awarded this year’s Science and Technology award at HUPO 2017 in Dublin Ireland. The Science and Technology Award at HUPO recognizes an individual or team who were key in the commercialization of a technology, product, or procedure that advances proteomics research
Forensics Made Easy by SCIEX Community | Blogs, ForensicMass spectrometry techniques are now commonplace for high throughput quantitation and screening, but also for research and discovery for food safety, forensics, environmental testing, and a host of other applications. The demands of these settings are different from traditional research, requiring MS systems which combine robust and reliable operation with straightforward day-to-day processing. The SCIEX X500R QTOF System has been developed specifically to meet these needs and is now helping to streamline the workflow of Zurich’s Institute of Forensic Medicine.
3 Workflows Designed to Accelerate Your Biologics Characterization by SCIEX Community | Biopharma, BlogsBiopharmaceutical development is booming and now an integral part of many pharmaceutical company pipelines. While these emerging biologics present exciting opportunities for the industry, their sophistication is challenging the limits of characterization at all stages of discovery and development.
Making Your Vitamin D Testing Dreams Come True by SCIEX Community | Blogs, ClinicalIf you work in clinical diagnostics, you can probably confirm that most clinical laboratories have seen a 5 to 6-fold increase in 25-hydroxyvitamin D testing over the past decade, and volume is growing. Furthermore, the Office of Inspector General (OIG) recently reported Vitamin D as one of the top five laboratory assays reimbursed by Medicare, accounting for 8.7 million laboratory tests and $337 million in reimbursement dollars.
The Science Behind SelexION Differential Mobility Spectrometry Technology by SCIEX Community | Blogs, TechnologyScientists and analysts across all fields of testing and research are increasingly challenged by complex samples requiring advanced analytical selectivity. And where LC-MS/MS sensitivity alone is not enough to meet the demands of modern day quantitative performance, Differential Ion Mobility Spectrometry (DMS) has proven to be a valuable addition.
Elimination of Interference using the SelexION Differential Mobility System for the Quantitation of Rituximab in a Dual Surrogate Peptide Approach by SCIEX Community | Biopharma, BlogsThe quantitation of proteins using the surrogate peptide approach can complicate nominal mass Triple Quadrupole MRM measurements due to co-extracted interference when using non-selective extraction techniques such as pellet digestion. High resolution coupled with accurate mass filtering can mitigate such interference, as reported previously for the determination of rituximab using the TripleTOF 6600 (Protein Quant Approaches). However, an additional level of selectivity can often be achieved on nominal mass systems using the orthogonal gas-phase separation approach offered by the SelexION+® Differential Mobility System technology (DMS). Interfaced between the sampling orifice and ion source, the DMS separates ions based upon differences in their migration rates under alternating low and high field waveform amplitudes (Figure 1). Ion clustering in low fields and declustering in high fields amplifies the distinction in mobility of an ion, resulting in improved resolution from interfering species of differing molecular cross-section.1-4
Happy Birthday to SWATH Acquisition! 5 Years of Innovation by Christie Hunter | Blogs, Life Science Research, ProteomicsWith its introduction at the HUPO World Congress in 2010 in Sydney Australia by Ruedi Aebersold, SWATH® Acquisition instantly intrigued scientists around the world. Here was a new technique with the potential to revolutionize the way proteomics studies were performed! Based on a data independent acquisition strategy using a SCIEX TripleTOF® 5600 system, SWATH was able to consistently identify and quantify at least as many peptides and proteins as other far more mature proteomics strategies on the market, but with quantitative accuracy and reproducibility rivaling gold standard MRM experiments! This solution was made broadly available to researchers with a full launch of SWATH Acquisition in the Analyst® TF 1.6 Software on the TripleTOF 5600+ System at ASMS 2012 in Vancouver (A Mine of Quantitative Proteomic Information. Prof Dr. Ruedi Aebersold, Head of the Department of Biology, ETH Zurich).
5 Tips for Calibrating a QTOF Mass Spectrometer by SCIEX Community | Blogs, Life Science Research, Proteomics, TechnologyDo you have questions about your mass spec? How about a workflow? Our community members are involved in active discussions and receive expert answers from customers like you, SCIEX scientists, and support specialists every week. One recent topic concerned the automatic calibration on TripleTOF® systems as answered by Dr. Christie Hunter whose focus is developing and testing innovative MS workflows for omics research through working collaboratively with the instrument, chemistry, and software research groups.
Enhancing In Vitro ADME Screening by SCIEX Community | Blogs, PharmaLC-MS technology is helping contract research organization Cyprotex Discovery Ltd. perform bioanalysis of small molecules, peptides, and other pharmaceuticals, enabling quantification to be performed in complex matrices during in vitro ADME studies.