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Unveiling the power of ZT Scan DIA: Insights from Ludwig Sinn’s presentation at World HUPO Congress 2024
In a recent presentation at the World HUPO Congress 2024, Ludwig Sinn from the Ralser lab shared exciting advancements in proteomics research, focusing on the innovative ZT Scan DIA acquisition modes developed in collaboration with SCIEX. Let us explore the key highlights and benefits of this innovative technology.
Tags: bag, brush, Charité-Universitätsmedizin, clean, clean beaker, cleaning, di water, glycoproteomics, high throughtput proteomics, job, Ludwig Sinn, period, place qj, position, Ralser lab, rinse, room, solution, space, tap, tap water, time, use, water, water rinse, white, wipe, ZenoTOF 7600 system, ZT Scan DIA
February 7, 2025
Exploring the power of ZT Scan DIA
In a recent presentation, Tim Heymann from Mann Lab at the Max Planck Institute of Biochemistry shared his first impressions of ZT Scan DIA, the novel data-independent acquisition strategy from SCIEX, highlighting its innovative approach and significant benefits for proteomics research. Let’s dive into the key points from his insightful talk.
Tags: bag, brush, clean, clean beaker, cleaning, di water, high throughtput proteomics, job, Mann Lab, Max Planck Institute of Biochemistry, period, phosphoproteomics, place qj, position, rinse, room, solution, space, tap, tap water, Tim Heymann, time, use, water, water rinse, white, wipe, ZenoTOF 7600+ system, ZT Scan DIA
Mass spec data across the cultivated meat value chain
We recently had the opportunity to chat with Alex Ward, PhD, Principal Consultant, Arta Bioanalytics to discover more about his work in developing transcriptomics and metabolomics data interpretation for the cultivated meat sector. As a specialist in multi-omics approaches, Alex is driving R&D, production and regulatory processes for the industry. Below are Alex’s responses to a few questions we asked, sharing his knowledge with the SCIEX community to drive the future of cultivated meat.
Tags: Alternative Proteins, Cultured Meats, food, Omics
June 7, 2024
Processing ZenoTOF data using the Human Pan-Human library from Swath Atlas (phl004_canonical_s32_osw.csv) and DIANN
Hello,
Tags: library, member_question, swath
May 17, 2023
Loss the contact closure signal
our 7600 couple with nanoLC Ultimate 3000 via contact closure. it has run without any loss connection during the batch. Just yesterday, the last injection keep equilibrating system until the LC finished the gradient run. We closed the software and power off LC and MS then started again but it did not help. The Dionex engineer also checked their LC and triggerring cable found both are ok.
Tags: cable, checked, close, computer, connection, contact closure, couple, current, direction, engineer, issue, item, link, machine, member_question, open, regard, run, similar, software, solve, work
Optimized rolling collision energy curves for IDA and SWATH DIA for peptides
During data dependent acquisition (DDA or IDA) or SWATH acquisition, the collision energy can be automatically adjusted according to the mass/charge and charge of the peptide. This dependency has been well characterized on our QTOF systems. By selecting rolling collision energy (Analyst software) or dynamic collision energy (SCIEX OS software) this function is invoked during […]
Tags: acquisition, analyst, change, collision, computer, control, developed, dynamic, energy, law, machine, money, object, option, power, select, setup, software, system, use
April 18, 2023
Protein Pilot Cysteine Modification
Hello,
Tags: addition, change, member_question, modification, residue
March 24, 2023
New features in OneOmics suite
I just wanted to thank the readers here, both the OneOmics suite users who’ve shared their time and watched OneOmics grow, and for all the talented developers and scientists who’ve made OneOmics suite what it is today.
- Bioanalysis/PK
- Biopharma
- Genomics
- Life Science Research
- Lipidomics
- Metabolomics
- Multi-Omics
- OneOmics
- Pharma
- Proteomics
- SCIEX information
- Software
Tags: dam, file, folks, information, look, machine, make, new, overview, platform, report, result, science, see, software, study, suite, video, visualization, work
September 22, 2022
ProteinPilot phosphopeptide library and DIA-NN
I have prepared a spectral library for a phosphopeptide enriched sample and I am generating my SWATH samples from similarly enriched samples. The problem is that when I use DIA-NN for the retention time alignment and quant, it doesn’t recognise the terminology of the spectral library annotated by ProteinPilot. DIA-NN recognises Unimod:21 for phosphorylation, but PP uses phospho(Tyr) etc. Other than changing the data dictionary to get around the mismatch, anyone have any suggestions for how I might resolve this? Thank you, Roz
May 25, 2022
Current proteomics software compatibility for ZenoTOF 7600 system
Below is a summary of various other software packages that are useful for processing proteomics data from the ZenoTOF 7600 system. Note this list is not comprehensive and only covers the tools we have lightly tested to date. Acquisition Type Software Files needed Notes DDA/IDA ProteinPilot app (OneOmics suite) Wiff Processes CID DDA data only […]
Tags: book, business, computer, converter, data, detector, file, form, machine, model, note, object, peak, process, software, structure, swath, system, unit, use
May 20, 2022
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